ESTED_CONTENT does not have an effect on the facts within the RELATION_ELEMENT.
ESTED_CONTENT does not affect the information in the RELATION_ELEMENT. The NESTED_CONTENT may be nested to arbitrary depth, with every single successive layer describing or clarifying the annotation inside which it is embedded. In this format, the annotation of an element is positioned within a single rdf:RDF element contained within an SBML annotation element. The annotation element can contain other elements in any order as described in Section three.2.4. The format described within this section only defines the type from the rdf:RDF element. The containing SBML SBase element should have a metaid attribute value. (As this attribute is from the type ID its value need to unique to the complete SBML document.) The initial element in the rdf:RDF element has to be an rdf:Description element with an rdf:about attribute. The worth in the rdf:about attribute have to be in the kind string where the string component is equal to the value of your metaid attribute in the containing SBML element. This format doesn’t define the kind of subsequent subelements in the rdf:RDF element. In distinct, the exceptional rdf:RDF element contained within the annotation can include other rdf:Description, which content may be any valid RDF. The rdf:Description element can include only an optional model history section (see Section six.six) followed by a sequence of zero or much more BioModels relation components. The optional model history section can only be present inside an SBML Model element. The precise sort of the relation components will differ depending around the partnership in between the SBML component and referenced details or resource. Though Section 6.5 describes the detailed semantics of each with the relation element kinds, the content of these elements follows the identical form. The BioModels qualifiers relation components should only include a single rdf:Bag element which in turn have to only include 1 or additional rdf:li components, and could include nested content material offering further annotations about the contents of your rdf:Bag. The rdf:li elements will have to only have a rdf:resource attribute containing a URI referring to an details resource (See Section 6.4). Note that the various namespaces ( xmlns:rdf, xmlns:dcterms, etc.) can be declared in any order, and that only the namespaces which can be truly utilized need to have be declared. If no vcard terms are utilised in a certain annotation, one example is, the line xmlns:vcard”http: w3.org200vcardrdf3.0″ is optional. Annotations in PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/23637907 this format can be positioned at various depths within a model element.Author Manuscript Author Manuscript Author Manuscript Author ManuscriptJ Integr Bioinform. Author manuscript; out there in PMC 207 June 02.Hucka et al.Page6.four Use of URIsAuthor Manuscript Author Manuscript Author Manuscript Author ManuscriptThe format represents a set of relationships between the SBML element and also the resources referred to by the contained rdf:resource attribute values. The BioModels relation components simply define the type of the connection. For instance, a Species element representing a protein could be annotated using a reference towards the database UniProt by the http:identifiers.orguniprotP2999 resource identifier, identifying specifically the protein described by the Species element. This identifier maps to a exceptional entry in UniProt which can be never ever deleted in the database. Within the case of UniProt, this can be the “accession” of the entry. When the entry is merged with yet order 2’,3,4,4’-tetrahydroxy Chalcone another 1, each “accession” are conserved. Similarly within a controlled vocabulary resource, every single term is connected.
