Cts the time at which the EventAssignment’s math expression is
Cts the time at which the EventAssignment’s math expression is evaluated. In other words, SBML allows decoupling the time at which the variable is assigned in the time at which its value expression is calculated. The optional sboTerm attribute on EventAssignment: EventAssignment has an optional sboTerm attribute of kind sboTerm (see Sections three..9 and five). When a value is offered to this attribute, it should be a valid SBO term identifier referring to a mathematical expression (i.e terms derived from SBO:0000064, “mathematical expression”). The EventAssignment should really have an “is a” partnership together with the SBO term, along with the term needs to be the PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/19054792 most precise (narrow) term that captures the kind of the assignment formula in the model. EventAssignment’s math: The math element contains a MathML expression that defines the new value on the object identified by the variable. The time at which this expression is evaluated is determined by Event’suseValuesFromTriggerTime attribute. If the attribute value is ” true” (the default), theABT-239 manufacturer Author Manuscript Author Manuscript Author Manuscript Author Manuscriptexpression must be evaluated when the occasion is fired; far more precisely, the values of identifiers occurring in MathML ci attributes inside the EventAssignment’s math expression would be the values they’ve in the point when the occasion fired. If, alternatively, useValuesFromTriggerTime’s value is ” false”, it implies the values at execution time need to be utilised; that is definitely, the values of identifiers occurring in MathML ci attributes in the EventAssignment’s math expression are the values they’ve in the point when the event executed. Units with the math formula in EventAssignment: In all situations, as would be anticipated, the units in the formula contained within the math element of EventAssignment must be constant with all the units of the object identified by the variable attribute. Much more precisely: Within the case of a species, an EventAssignment sets the referenced species’ quantity (concentration or amount of substance) to the value determined by the formula in math. The units on the math formula must be identical for the units on the species as defined in Section four.8.5. Inside the case of a compartment, an EventAssignment sets the referenced compartment’s size towards the size determined by the formula in math. The general units of your formula needs to be identical towards the units specified for the size of your compartment identified by the worth in the EventAssignment’s variable attribute. (See Section four.7.5 for an explanation of how the units from the compartment’s size are determined.) Inside the case of a parameter, an EventAssignment sets the referenced parameter’s worth to that determined by the formula in math. The overall units on the formulaJ Integr Bioinform. Author manuscript; available in PMC 207 June 02.Hucka et al.Pageshould be identical towards the units defined for the parameter identified by the value in the EventAssignment’s variable attribute. (See Section four.9.3 for an explanation of how the units on the parameter are determined.) Note that the formula placed within the math element has no assumed units. The consistency of your units on the formula, and the units with the entity which the assignment impacts, should be explicitly established just as inside the case from the value of delay. four.four.five Example Occasion definitionsA example of an Event object follows. This structure makes the assignment k2 0 in the point when P P2:Author Manuscript Author Manuscript Author Manuscript Author ManuscriptA comprehensive exa.
